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Preheat oven to 350 degrees F.
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Mix the flours with the cocoa, salt, and baking soda. In a separate bowl, whisk the coconut oil with the honey and eggs until well combined.
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Combine the wet and dry ingredients and let stand for 5 minutes. Scoop the batter into a greased muffin tin or use paper liners.
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Sprinkle with the coconut sugar and bake for 15-20 minutes, or until a toothpick inserted in the center comes out clean.